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MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 [ Ochotona princeps (American pika) ]

Gene ID: 101528572, updated on 8-Mar-2024

Summary

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Gene symbol
MDGA1
Gene description
MAM domain containing glycosylphosphatidylinositol anchor 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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See MDGA1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 1 NC_080832.1 (109988761..110035398)
102 previous assembly OchPri4.0 (GCF_014633375.1) 12 NC_050547.1 (35423647..35477836, complement)

Chromosome 1 - NC_080832.1Genomic Context describing neighboring genes Neighboring gene zinc finger AN1-type containing 3 Neighboring gene serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B Neighboring gene U6atac minor spliceosomal RNA Neighboring gene non-histone chromosomal protein HMG-14-like Neighboring gene uncharacterized LOC131481804 Neighboring gene coiled-coil domain containing 167

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables axon guidance receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MAM domain-containing glycosylphosphatidylinositol anchor protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080832.1 Reference mOchPri1.hap1

    Range
    109988761..110035398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004590331.3 → XP_004590388.1  MAM domain-containing glycosylphosphatidylinositol anchor protein 1

    Conserved Domains (6) summary
    cd06263
    Location:753 → 916
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    cd00096
    Location:153 → 217
    Ig; Immunoglobulin domain
    smart00408
    Location:254 → 315
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:248 → 326
    IG_like; Immunoglobulin like
    pfam00629
    Location:753 → 917
    MAM; MAM domain, meprin/A5/mu
    cl11960
    Location:459 → 515
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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