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LOC101528504 histo-blood group ABO system transferase-like [ Ochotona princeps (American pika) ]

Gene ID: 101528504, updated on 26-Oct-2023

Summary

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Gene symbol
LOC101528504
Gene description
histo-blood group ABO system transferase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
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Genomic context

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See LOC101528504 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 16 NC_080847.1 (46813028..46825715, complement)
102 previous assembly OchPri4.0 (GCF_014633375.1) 5 NC_050540.1 (12736440..12749332)

Chromosome 16 - NC_080847.1Genomic Context describing neighboring genes Neighboring gene potassium channel tetramerization domain containing 15 Neighboring gene histo-blood group ABO system transferase 2-like Neighboring gene small ribosomal subunit protein uS2-like Neighboring gene LSM14A mRNA processing body assembly factor Neighboring gene small nucleolar RNA SNORA29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histo-blood group ABO system transferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080847.1 Reference mOchPri1.hap1

    Range
    46813028..46825715 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036492749.2 → XP_036348642.2  histo-blood group ABO system transferase-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases