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CCDC115 coiled-coil domain containing 115 [ Ochotona princeps (American pika) ]

Gene ID: 101524252, updated on 8-Mar-2024

Summary

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Gene symbol
CCDC115
Gene description
coiled-coil domain containing 115
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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See CCDC115 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 5 NC_080836.1 (11147754..11149075)
102 previous assembly OchPri4.0 (GCF_014633375.1) 7 NC_050542.1 (14268200..14269442)

Chromosome 5 - NC_080836.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase non-receptor type 18 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene IMP U3 small nucleolar ribonucleoprotein 4 Neighboring gene GLI family zinc finger 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in vacuolar proton-transporting V-type ATPase complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil domain-containing protein 115

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080836.1 Reference mOchPri1.hap1

    Range
    11147754..11149075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004589335.2 → XP_004589392.2  coiled-coil domain-containing protein 115 isoform X2

  2. XM_036493333.2 → XP_036349226.2  coiled-coil domain-containing protein 115 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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