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LIPF lipase F, gastric type [ Ochotona princeps (American pika) ]

Gene ID: 101524082, updated on 8-Mar-2024

Summary

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Gene symbol
LIPF
Gene description
lipase F, gastric type
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human all
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Genomic context

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See LIPF in Genome Data Viewer
Location:
chromosome: 13
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 13 NC_080844.1 (16785418..16796512, complement)
102 previous assembly OchPri4.0 (GCF_014633375.1) 18 NC_050553.1 (55121147..55132376)

Chromosome 13 - NC_080844.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene lipase family member N Neighboring gene lipase family member K Neighboring gene lipase family member J Neighboring gene renalase, FAD dependent amine oxidase Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gastric triacylglycerol lipase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080844.1 Reference mOchPri1.hap1

    Range
    16785418..16796512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036495775.2 → XP_036351668.1  gastric triacylglycerol lipase isoform X2

    Conserved Domains (1) summary
    PLN02872
    Location:36 → 357
    PLN02872; triacylglycerol lipase

  2. XM_004583379.2 → XP_004583436.1  gastric triacylglycerol lipase isoform X1

    Conserved Domains (3) summary
    pfam00561
    Location:78 → 378
    Abhydrolase_1; alpha/beta hydrolase fold
    pfam04083
    Location:35 → 97
    Abhydro_lipase; Partial alpha/beta-hydrolase lipase region
    pfam12695
    Location:79 → 201
    Abhydrolase_5; Alpha/beta hydrolase family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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