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HCFC1 host cell factor C1 [ Ochotona princeps (American pika) ]

Gene ID: 101523256, updated on 8-Mar-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
26
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) X NC_080865.1 (106444048..106465895, complement)
102 previous assembly OchPri4.0 (GCF_014633375.1) Unplaced Scaffold NW_023435808.1 (3330..18203, complement)

Chromosome X - NC_080865.1Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subunit Neighboring gene renin binding protein Neighboring gene transmembrane protein 187 Neighboring gene interleukin 1 receptor associated kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1
Names
host cell factor C1 (VP16-accessory protein)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080865.1 Reference mOchPri1.hap1

    Range
    106444048..106465895 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058658204.1 → XP_058514187.1  host cell factor 1 isoform X8

  2. XM_058658200.1 → XP_058514183.1  host cell factor 1 isoform X5

  3. XM_058658199.1 → XP_058514182.1  host cell factor 1 isoform X4

  4. XM_058658201.1 → XP_058514184.1  host cell factor 1 isoform X6

  5. XM_058658203.1 → XP_058514186.1  host cell factor 1 isoform X7

  6. XM_058658198.1 → XP_058514181.1  host cell factor 1 isoform X3

  7. XM_058658197.1 → XP_058514180.1  host cell factor 1 isoform X2

  8. XM_058658195.1 → XP_058514178.1  host cell factor 1 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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