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AGPS alkylglycerone phosphate synthase [ Ochotona princeps (American pika) ]

Gene ID: 101522350, updated on 8-Mar-2024

Summary

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Gene symbol
AGPS
Gene description
alkylglycerone phosphate synthase
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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See AGPS in Genome Data Viewer
Location:
chromosome: 5
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 5 NC_080836.1 (56661828..56801513)
102 previous assembly OchPri4.0 (GCF_014633375.1) 7 NC_050542.1 (62784188..62912852)

Chromosome 5 - NC_080836.1Genomic Context describing neighboring genes Neighboring gene NFE2 like bZIP transcription factor 2 Neighboring gene TP53-regulated inhibitor of apoptosis 1-like Neighboring gene selenoprotein K-like Neighboring gene intraflagellar transport 70B Neighboring gene intraflagellar transport protein 70A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables FAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alkylglycerone-phosphate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkyldihydroxyacetonephosphate synthase, peroxisomal

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080836.1 Reference mOchPri1.hap1

    Range
    56661828..56801513
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004577025.3 → XP_004577082.2  alkyldihydroxyacetonephosphate synthase, peroxisomal isoform X2

  2. XM_058664673.1 → XP_058520656.1  alkyldihydroxyacetonephosphate synthase, peroxisomal isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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