U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PLD2 phospholipase D2 [ Ochotona princeps (American pika) ]

Gene ID: 101521179, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
PLD2
Gene description
phospholipase D2
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PLD2 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 17 NC_080848.1 (54261263..54276961)
102 previous assembly OchPri4.0 (GCF_014633375.1) 19 NC_050554.1 (44494467..44509064, complement)

Chromosome 17 - NC_080848.1Genomic Context describing neighboring genes Neighboring gene chromosome 17 C17orf114 homolog Neighboring gene proteasome 20S subunit beta 6 Neighboring gene misshapen like kinase 1 Neighboring gene chromosome 17 C17orf107 homolog Neighboring gene cholinergic receptor nicotinic epsilon subunit

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phospholipase D activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell motility IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidic acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
phospholipase D2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080848.1 Reference mOchPri1.hap1

    Range
    54261263..54276961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004594846.2 → XP_004594903.2  phospholipase D2 isoform X2

  2. XM_058676390.1 → XP_058532373.1  phospholipase D2 isoform X1

  3. XM_058676391.1 → XP_058532374.1  phospholipase D2 isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.