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ZBTB6 zinc finger and BTB domain containing 6 [ Ochotona princeps (American pika) ]

Gene ID: 101521095, updated on 8-Mar-2024

Summary

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Gene symbol
ZBTB6
Gene description
zinc finger and BTB domain containing 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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See ZBTB6 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 14 NC_080845.1 (8774629..8793752)
102 previous assembly OchPri4.0 (GCF_014633375.1) 1A NC_050558.1 (7907324..7908613)

Chromosome 14 - NC_080845.1Genomic Context describing neighboring genes Neighboring gene spermatid perinuclear RNA binding protein Neighboring gene RAB GTPase activating protein 1 Neighboring gene G protein-coupled receptor 21 Neighboring gene zinc finger and BTB domain containing 26 Neighboring gene small nucleolar RNA SNORD90 Neighboring gene ring finger and CCCH-type domains 2 Neighboring gene phosducin like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080845.1 Reference mOchPri1.hap1

    Range
    8774629..8793752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058672391.1 → XP_058528374.1  zinc finger and BTB domain-containing protein 6

  2. XM_058672390.1 → XP_058528373.1  zinc finger and BTB domain-containing protein 6

  3. XM_004593591.4 → XP_004593648.1  zinc finger and BTB domain-containing protein 6

    Conserved Domains (6) summary
    smart00225
    Location:34 → 127
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:329 → 404
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:333 → 353
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:331 → 353
    zf-C2H2; Zinc finger, C2H2 type
    pfam00651
    Location:23 → 123
    BTB; BTB/POZ domain
    pfam13465
    Location:345 → 369
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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