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FDFT1 farnesyl-diphosphate farnesyltransferase 1 [ Ochotona princeps (American pika) ]

Gene ID: 101517883, updated on 18-Sep-2024

Summary

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Gene symbol
FDFT1
Gene description
farnesyl-diphosphate farnesyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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See FDFT1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 11 NC_080842.1 (42788400..42844363)
102 previous assembly OchPri4.0 (GCF_014633375.1) 2A NC_050560.1 (31134615..31165618, complement)

Chromosome 11 - NC_080842.1Genomic Context describing neighboring genes Neighboring gene GATA binding protein 4 Neighboring gene nei like DNA glycosylase 2 Neighboring gene cathepsin B Neighboring gene U6 spliceosomal RNA Neighboring gene defensin beta 136

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables squalene synthase [NAD(P)H] activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squalene synthase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080842.1 Reference mOchPri1.hap1

    Range
    42788400..42844363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058670099.1 → XP_058526082.1  squalene synthase isoform X2

  2. XM_058670098.1 → XP_058526081.1  squalene synthase isoform X1

  3. XM_058670097.1 → XP_058526080.1  squalene synthase isoform X1

Nucleotide Protein
Heading Accession and Version

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