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CHAT choline O-acetyltransferase [ Ochotona princeps (American pika) ]

Gene ID: 101517234, updated on 8-Mar-2024

Summary

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Gene symbol
CHAT
Gene description
choline O-acetyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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See CHAT in Genome Data Viewer
Location:
chromosome: 13
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 13 NC_080844.1 (6401830..6446810, complement)
102 previous assembly OchPri4.0 (GCF_014633375.1) 18 NC_050553.1 (66254391..66304659)

Chromosome 13 - NC_080844.1Genomic Context describing neighboring genes Neighboring gene oxoglutarate dehydrogenase L Neighboring gene chromosome 13 C10orf53 homolog Neighboring gene solute carrier family 18 member A3 Neighboring gene ERCC excision repair 6, chromatin remodeling factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables choline O-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetylcholine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuromuscular synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline O-acetyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080844.1 Reference mOchPri1.hap1

    Range
    6401830..6446810 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058671400.1 → XP_058527383.1  choline O-acetyltransferase isoform X2

  2. XM_058671399.1 → XP_058527382.1  choline O-acetyltransferase isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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