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RPN2 ribophorin II [ Ochotona princeps (American pika) ]

Gene ID: 101516424, updated on 8-Mar-2024

Summary

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Gene symbol
RPN2
Gene description
ribophorin II
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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See RPN2 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 22 NC_080853.1 (15928899..15970898, complement)
102 previous assembly OchPri4.0 (GCF_014633375.1) 4A NC_050562.1 (23369512..23411564)

Chromosome 22 - NC_080853.1Genomic Context describing neighboring genes Neighboring gene mannosidase beta like Neighboring gene growth hormone releasing hormone Neighboring gene maestro heat like repeat family member 8 Neighboring gene RB transcriptional corepressor like 1 Neighboring gene SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 Neighboring gene microtubule crosslinking factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of oligosaccharyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080853.1 Reference mOchPri1.hap1

    Range
    15928899..15970898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004585793.3 → XP_004585850.2  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform X2

  2. XM_012927186.2 → XP_012782640.2  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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