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COLEC11 collectin subfamily member 11 [ Ochotona princeps (American pika) ]

Gene ID: 101516414, updated on 8-Mar-2024

Summary

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Gene symbol
COLEC11
Gene description
collectin subfamily member 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Ochotona princeps
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona
Orthologs
human mouse all
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Genomic context

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See COLEC11 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_07 current mOchPri1.hap1 (GCF_030435755.1) 8 NC_080839.1 (81258232..81356769, complement)
102 previous assembly OchPri4.0 (GCF_014633375.1) 2 NC_050537.1 (1766796..1799716)

Chromosome 8 - NC_080839.1Genomic Context describing neighboring genes Neighboring gene doublecortin domain containing 2C Neighboring gene allantoicase Neighboring gene ribonuclease H1 Neighboring gene trafficking protein particle complex subunit 12 Neighboring gene ribosomal protein S7 Neighboring gene acireductone dioxygenase 1 Neighboring gene EARP complex and GARP complex interacting protein 1 Neighboring gene uncharacterized LOC131480949

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collectin-11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030435755.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mOchPri1.hap1

Genomic

  1. NC_080839.1 Reference mOchPri1.hap1

    Range
    81258232..81356769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004582581.2 → XP_004582638.2  collectin-11 isoform X2

  2. XM_058668321.1 → XP_058524304.1  collectin-11 isoform X1

  3. XM_058668322.1 → XP_058524305.1  collectin-11 isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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