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LOC101509352 pectate lyase-like [ Cicer arietinum (chickpea) ]

Gene ID: 101509352, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101509352
Gene description
pectate lyase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Cicer arietinum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Cicereae; Cicer
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Genomic context

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See LOC101509352 in Genome Data Viewer
Location:
chromosome: Ca2
Exon count:
3
Annotation release Status Assembly Chr Location
102 current ASM33114v1 (GCF_000331145.1) Ca2 NC_021161.1 (3118131..3120203, complement)

Chromosome Ca2 - NC_021161.1Genomic Context describing neighboring genes Neighboring gene outer plastidial membrane protein porin-like Neighboring gene auxin efflux carrier component 8-like Neighboring gene CRIB domain-containing protein RIC10-like Neighboring gene polyadenylation and cleavage factor homolog 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021161.1 Chromosome Ca2 Reference ASM33114v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectate lyase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cicer arietinum Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM33114v1 Primary Assembly

Genomic

  1. NC_021161.1 Reference ASM33114v1 Primary Assembly

    Range
    3118131..3120203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004489317.3 → XP_004489374.1  pectate lyase-like

    UniProtKB/TrEMBL
    A0A1S2XJ44
    Conserved Domains (3) summary
    smart00656
    Location:173 → 367
    Amb_all; Amb_all domain
    pfam04431
    Location:33 → 84
    Pec_lyase_N; Pectate lyase, N terminus
    pfam13229
    Location:202 → 301
    Beta_helix; Right handed beta helix region
Nucleotide Protein
Heading Accession and Version

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