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LOC101488536 probable beta-1,4-xylosyltransferase IRX10L [ Cicer arietinum (chickpea) ]

Gene ID: 101488536, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101488536
Gene description
probable beta-1,4-xylosyltransferase IRX10L
Gene type
protein coding
RefSeq status
MODEL
Organism
Cicer arietinum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Cicereae; Cicer
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Genomic context

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See LOC101488536 in Genome Data Viewer
Location:
chromosome: Ca6
Exon count:
4
Annotation release Status Assembly Chr Location
102 current ASM33114v1 (GCF_000331145.1) Ca6 NC_021165.1 (6294814..6298427, complement)

Chromosome Ca6 - NC_021165.1Genomic Context describing neighboring genes Neighboring gene TOM1-like protein 5 Neighboring gene ferrochelatase-2, chloroplastic-like Neighboring gene phosphatidylinositol transfer protein 3-like Neighboring gene phosphatidylinositol transfer protein 3-like Neighboring gene protein BONZAI 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_021165.1 Chromosome Ca6 Reference ASM33114v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-beta-D-xylan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucuronoxylan glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10L

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cicer arietinum Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM33114v1 Primary Assembly

Genomic

  1. NC_021165.1 Reference ASM33114v1 Primary Assembly

    Range
    6294814..6298427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004503787.3 → XP_004503844.1  probable beta-1,4-xylosyltransferase IRX10L

    UniProtKB/TrEMBL
    A0A1S2YF04
    Conserved Domains (1) summary
    pfam03016
    Location:49 → 344
    Exostosin; Exostosin family
Nucleotide Protein
Heading Accession and Version

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