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nop56 NOP56 ribonucleoprotein homolog [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101487810, updated on 11-Apr-2024

Summary

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Gene symbol
nop56
Gene description
NOP56 ribonucleoprotein homolog
See related
Ensembl:ENSMZEG00005026863
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See nop56 in Genome Data Viewer
Location:
chromosome: LG5
Exon count:
12
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG5 NC_036784.1 (11030038..11037329, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531721.1 (7556372..7564333)

Linkage Group LG5 - NC_036784.1Genomic Context describing neighboring genes Neighboring gene DDB1 and CUL4 associated factor 12 Neighboring gene ubiquitin associated protein 2a Neighboring gene small nucleolar RNA SNORD57 Neighboring gene small nucleolar RNA SNORA26 Neighboring gene small nucleolar RNA SNORA51 Neighboring gene uncharacterized LOC101478929 Neighboring gene aquaporin 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box C/D methylation guide snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar protein 56

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036784.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    11030038..11037329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004545226.3 → XP_004545283.1  nucleolar protein 56

    UniProtKB/TrEMBL
    A0A3P9DNJ1
    Related
    ENSMZEP00005036009.1, ENSMZET00005037275.1
    Conserved Domains (2) summary
    COG1498
    Location:47 → 413
    SIK1; RNA processing factor Prp31, contains Nop domain [Translation, ribosomal structure and biogenesis]
    pfam08156
    Location:5 → 70
    NOP5NT; NOP5NT (NUC127) domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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