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septin6 septin 6 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101486949, updated on 8-Mar-2024

Summary

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Gene symbol
septin6
Gene description
septin 6
See related
Ensembl:ENSMZEG00005007935
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Also known as
sept6
Orthologs
human zebrafish all
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Genomic context

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See septin6 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
15
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG2 NC_036781.1 (30006852..30025060)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531722.1 (6288868..6307094)

Linkage Group LG2 - NC_036781.1Genomic Context describing neighboring genes Neighboring gene sosondowah ankyrin repeat domain family d Neighboring gene PTTG1 regulator of sister chromatid separation, securin Neighboring gene NFKB repressing factor Neighboring gene ubiquitin-conjugating enzyme E2A (RAD6 homolog)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytoskeleton-dependent cytokinesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell division site IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of septin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in septin ring IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
septin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036781.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    30006852..30025060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004545771.4 → XP_004545828.1  septin-6 isoform X1

    Conserved Domains (2) summary
    cd01850
    Location:92 → 359
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:72 → 425
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  2. XM_004545772.5 → XP_004545829.1  septin-6 isoform X2

    Conserved Domains (2) summary
    cd01850
    Location:92 → 359
    CDC_Septin; CDC/Septin GTPase family
    COG5019
    Location:72 → 425
    CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]

  3. XM_004545773.5 → XP_004545830.1  septin-6 isoform X3

    See identical proteins and their annotated locations for XP_004545830.1

    UniProtKB/TrEMBL
    A0A3P9BKV6
    Related
    ENSMZEP00005010531.1, ENSMZET00005010903.1
    Conserved Domains (1) summary
    cd01850
    Location:92 → 359
    CDC_Septin; CDC/Septin GTPase family

  4. XM_004545774.5 → XP_004545831.1  septin-6 isoform X4

    See identical proteins and their annotated locations for XP_004545831.1

    UniProtKB/TrEMBL
    A0A3P9BKV6
    Related
    ENSMZEP00005010535.1, ENSMZET00005010907.1
    Conserved Domains (1) summary
    cd01850
    Location:92 → 359
    CDC_Septin; CDC/Septin GTPase family

  5. XM_024805247.1 → XP_024661015.1  septin-6 isoform X3

    UniProtKB/TrEMBL
    A0A3P9BKV6
    Conserved Domains (1) summary
    cd01850
    Location:92 → 359
    CDC_Septin; CDC/Septin GTPase family
Nucleotide Protein
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