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slu7 SLU7 homolog, splicing factor [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101486554, updated on 8-Mar-2024

Summary

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Gene symbol
slu7
Gene description
SLU7 homolog, splicing factor
See related
Ensembl:ENSMZEG00005012180
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See slu7 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
15
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG2 NC_036781.1 (22462940..22467787)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531715.1 (364491..369349, complement)

Linkage Group LG2 - NC_036781.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101486828 Neighboring gene nuclear receptor binding SET domain protein 1a Neighboring gene C1q and TNF related 2 Neighboring gene cyclin J-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pre-mRNA 3'-splice site binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor SLU7
Names
SLU7 splicing factor homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036781.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    22462940..22467787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012924150.2 → XP_012779604.1  pre-mRNA-splicing factor SLU7

    UniProtKB/TrEMBL
    A0A3P9C362
    Related
    ENSMZEP00005016268.1, ENSMZET00005016786.1
    Conserved Domains (1) summary
    pfam11708
    Location:154 → 410
    Slu7; Pre-mRNA splicing Prp18-interacting factor
Nucleotide Protein
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