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polr2j RNA polymerase II subunit J [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101486043, updated on 12-Sep-2024

Summary

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Gene symbol
polr2j
Gene description
RNA polymerase II subunit J
See related
Ensembl:ENSMZEG00005011932
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
zebrafish all
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Genomic context

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See polr2j in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
104 current M_zebra_UMD2a (GCF_000238955.4) Unplaced Scaffold NW_020192584.1 (54253..56056)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531769.1 (189802..191567)

NW_020192584.1Genomic Context describing neighboring genes Neighboring gene regulator of G-protein signaling 9-binding protein Neighboring gene ubiquitin-conjugating enzyme E2C Neighboring gene deoxynucleotidyltransferase terminal interacting protein 1 Neighboring gene phosphorylated CTD interacting factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit RPB11-a
Names
polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NW_020192584.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    54253..56056
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004558950.4 → XP_004559007.3  DNA-directed RNA polymerase II subunit RPB11-a

    UniProtKB/TrEMBL
    A0A3P9C0X5
    Related
    ENSMZEP00005015890.1, ENSMZET00005016401.1
    Conserved Domains (1) summary
    cd06926
    Location:14 → 105
    RNAP_II_RPB11; RPB11 subunit of Eukaryotic RNA polymerase II
Nucleotide Protein
Heading Accession and Version

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