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rpl23a ribosomal protein L23a [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101486005, updated on 8-Mar-2024

Summary

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Gene symbol
rpl23a
Gene description
ribosomal protein L23a
See related
Ensembl:ENSMZEG00005019026
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See rpl23a in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
5
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG10 NC_036789.1 (14072964..14075469, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531733.1 (81807..84318, complement)

Linkage Group LG10 - NC_036789.1Genomic Context describing neighboring genes Neighboring gene transcriptional coactivator YAP1 Neighboring gene uncharacterized LOC105940891 Neighboring gene baculoviral IAP repeat containing 2 Neighboring gene small nucleolar RNA SNORD42 Neighboring gene small nucleolar RNA Z17 Neighboring gene small nucleolar RNA Z17 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 Neighboring gene HEAT repeat containing 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal large subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S ribosomal protein L23a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036789.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    14072964..14075469 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004549975.1 → XP_004550032.1  60S ribosomal protein L23a

    See identical proteins and their annotated locations for XP_004550032.1

    UniProtKB/TrEMBL
    A0A3P9CTZ0
    Related
    ENSMZEP00005025497.1, ENSMZET00005026323.1
    Conserved Domains (1) summary
    PTZ00191
    Location:50 → 170
    PTZ00191; 60S ribosomal protein L23a; Provisional
Nucleotide Protein
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Gene LinkOut

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