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utp20 UTP20 small subunit processome component [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101485640, updated on 8-Mar-2024

Summary

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Gene symbol
utp20
Gene description
UTP20 small subunit processome component
See related
Ensembl:ENSMZEG00005018123
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See utp20 in Genome Data Viewer
Location:
chromosome: LG17
Exon count:
62
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG17 NC_036796.1 (32251947..32279267)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531746.1 (2872326..2895939, complement)

Linkage Group LG17 - NC_036796.1Genomic Context describing neighboring genes Neighboring gene sodium-coupled monocarboxylate transporter 1-like Neighboring gene uncharacterized LOC106675941 Neighboring gene uncharacterized LOC112436244 Neighboring gene sodium-coupled monocarboxylate transporter 1 Neighboring gene protein LCHN Neighboring gene ADP-ribosylation factor-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small subunit processome component 20 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036796.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    32251947..32279267
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004553882.3 → XP_004553939.2  small subunit processome component 20 homolog isoform X1

    UniProtKB/TrEMBL
    A0A3P9CPI3
    Conserved Domains (1) summary
    pfam07539
    Location:925 → 1553
    DRIM; Down-regulated in metastasis

  2. XM_004553883.3 → XP_004553940.2  small subunit processome component 20 homolog isoform X2

    UniProtKB/TrEMBL
    A0A3P9CPI3
    Related
    ENSMZEP00005024250.1, ENSMZET00005025046.1
    Conserved Domains (1) summary
    pfam07539
    Location:924 → 1552
    DRIM; Down-regulated in metastasis
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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