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sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101484604, updated on 8-Mar-2024

Summary

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Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
See related
Ensembl:ENSMZEG00005012024
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See sgcd in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
11
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG10 NC_036789.1 (29238658..29667180)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531759.1 (1093160..1252010)

Linkage Group LG10 - NC_036789.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106676641 Neighboring gene uncharacterized LOC101484423 Neighboring gene uncharacterized LOC112435466 Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta
sarcoglycan, delta (35kDa dystrophin-associated glycoprotein)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036789.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    29238658..29667180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024804094.1 → XP_024659862.1  delta-sarcoglycan isoform X3

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_004556829.3 → XP_004556886.1  delta-sarcoglycan isoform X3

    See identical proteins and their annotated locations for XP_004556886.1

    Conserved Domains (1) summary
    pfam04790
    Location:22 → 279
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_024804093.1 → XP_024659861.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A3P9C182
    Related
    ENSMZEP00005016005.1, ENSMZET00005016517.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_024804092.1 → XP_024659860.1  delta-sarcoglycan isoform X1

    Conserved Domains (1) summary
    pfam04790
    Location:37 → 294
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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