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galnt9 polypeptide N-acetylgalactosaminyltransferase 9 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101479740, updated on 8-Mar-2024

Summary

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Gene symbol
galnt9
Gene description
polypeptide N-acetylgalactosaminyltransferase 9
See related
Ensembl:ENSMZEG00005018732
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See galnt9 in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
11
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG12 NC_036791.1 (2626017..2734256)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531767.1 (503774..612964, complement)

Linkage Group LG12 - NC_036791.1Genomic Context describing neighboring genes Neighboring gene fibrosin-like 1 Neighboring gene transcriptional regulatory protein AlgP-like Neighboring gene ATPase family AAA domain containing 1a Neighboring gene 5-hydroxytryptamine (serotonin) receptor 7c

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036791.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    2626017..2734256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004558551.2 → XP_004558608.1  polypeptide N-acetylgalactosaminyltransferase 9

    UniProtKB/TrEMBL
    A0A3P9CST6, A0A3P9CSU0
    Related
    ENSMZEP00005025092.1, ENSMZET00005025910.1
    Conserved Domains (2) summary
    cd02510
    Location:155 → 454
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:465 → 593
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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