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kirrel3l kirre like nephrin family adhesion molecule 3, like [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101479283, updated on 8-Mar-2024

Summary

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Gene symbol
kirrel3l
Gene description
kirre like nephrin family adhesion molecule 3, like
See related
Ensembl:ENSMZEG00005013098
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Also known as
kirrel2
Orthologs
human zebrafish all
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Genomic context

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See kirrel3l in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
15
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG11 NC_036790.1 (14998034..15029915, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531715.1 (9533300..9565159)

Linkage Group LG11 - NC_036790.1Genomic Context describing neighboring genes Neighboring gene amyloid beta (A4) precursor-like protein 1 Neighboring gene ST14 transmembrane serine protease matriptase Neighboring gene NPHS1 adhesion molecule, nephrin Neighboring gene FXYD domain containing ion transport regulator 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1
Names
kin of IRRE like 2
kirre like nephrin family adhesion molecule 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036790.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    14998034..15029915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004541552.1 → XP_004541609.1  kin of IRRE-like protein 1 isoform X2

    See identical proteins and their annotated locations for XP_004541609.1

    UniProtKB/TrEMBL
    A0A3P9C556
    Related
    ENSMZEP00005017410.1, ENSMZET00005017962.1
    Conserved Domains (6) summary
    cd05758
    Location:389 → 486
    Ig5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins
    cd05759
    Location:136 → 217
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    smart00408
    Location:32 → 104
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:117 → 215
    IG_like; Immunoglobulin like
    pfam07679
    Location:306 → 387
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:311 → 387
    Ig_2; Immunoglobulin domain

  2. XM_004541551.1 → XP_004541608.1  kin of IRRE-like protein 1 isoform X1

    Conserved Domains (6) summary
    cd05758
    Location:389 → 486
    Ig5_KIRREL3-like; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins
    cd05759
    Location:136 → 217
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    smart00408
    Location:32 → 104
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:117 → 215
    IG_like; Immunoglobulin like
    pfam07679
    Location:306 → 387
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:311 → 387
    Ig_2; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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