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urb1 URB1 ribosome biogenesis homolog [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101477769, updated on 8-Mar-2024

Summary

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Gene symbol
urb1
Gene description
URB1 ribosome biogenesis homolog
See related
Ensembl:ENSMZEG00005011862
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See urb1 in Genome Data Viewer
Location:
chromosome: LG14
Exon count:
39
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG14 NC_036793.1 (28984792..29001562)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531778.1 (2436089..2452655, complement)

Linkage Group LG14 - NC_036793.1Genomic Context describing neighboring genes Neighboring gene arfaptin-2 Neighboring gene protocadherin-16 Neighboring gene splicing factor, arginine/serine-rich 15 Neighboring gene TIAM Rac1 associated GEF 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nucleolar pre-ribosomal-associated protein 1
Names
URB1 ribosome biogenesis 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036793.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    28984792..29001562
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004560581.1 → XP_004560638.1  nucleolar pre-ribosomal-associated protein 1

    UniProtKB/TrEMBL
    A0A3P9C191
    Related
    ENSMZEP00005015857.1, ENSMZET00005016368.1
    Conserved Domains (2) summary
    pfam11707
    Location:73 → 389
    Npa1; Ribosome 60S biogenesis N-terminal
    pfam16201
    Location:1656 → 1845
    NopRA1; Nucleolar pre-ribosomal-associated protein 1
Nucleotide Protein
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Gene LinkOut

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