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pes pescadillo [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101476782, updated on 8-Mar-2024

Summary

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Gene symbol
pes
Gene description
pescadillo
See related
Ensembl:ENSMZEG00005016529
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See pes in Genome Data Viewer
Location:
chromosome: LG12
Exon count:
15
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG12 NC_036791.1 (16880773..16901901)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531720.1 (8497503..8514720, complement)

Linkage Group LG12 - NC_036791.1Genomic Context describing neighboring genes Neighboring gene polymerase (DNA directed), epsilon Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 2 Neighboring gene galactose-3-O-sulfotransferase 1a Neighboring gene leucine zipper like post translational regulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PeBoW complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pescadillo

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036791.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    16880773..16901901
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014414035.2 → XP_014269521.2  pescadillo

    UniProtKB/TrEMBL
    A0A3P9CJM9
    Related
    ENSMZEP00005022036.1, ENSMZET00005022769.1
    Conserved Domains (2) summary
    smart00292
    Location:326 → 403
    BRCT; breast cancer carboxy-terminal domain
    pfam06732
    Location:9 → 279
    Pescadillo_N; Pescadillo N-terminus
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases