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ifih1 interferon induced with helicase C domain 1 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101476548, updated on 8-Mar-2024

Summary

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Gene symbol
ifih1
Gene description
interferon induced with helicase C domain 1
See related
Ensembl:ENSMZEG00005007158
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See ifih1 in Genome Data Viewer
Location:
chromosome: LG16
Exon count:
17
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG16 NC_036795.1 (18950340..18963037)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531763.1 (197660..210390, complement)

Linkage Group LG16 - NC_036795.1Genomic Context describing neighboring genes Neighboring gene fidgetin Neighboring gene potassium voltage-gated channel subfamily H member 7 Neighboring gene fibroblast activation protein, alpha Neighboring gene glucagon b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of interferon-beta production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to virus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon-induced helicase C domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036795.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    18950340..18963037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014409036.3 → XP_014264522.2  interferon-induced helicase C domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A3P9BHQ3
    Related
    ENSMZEP00005009445.1, ENSMZET00005009800.1
    Conserved Domains (3) summary
    cl13152
    Location:858 → 973
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
    cl14633
    Location:6 → 97
    DD; Death Domain Superfamily of protein-protein interaction domains
    cl17041
    Location:293 → 841
    helicase_insert_domain

  2. XM_014409037.3 → XP_014264523.2  interferon-induced helicase C domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3P9BHT7
    Related
    ENSMZEP00005009457.1, ENSMZET00005009815.1
    Conserved Domains (3) summary
    cl13152
    Location:841 → 956
    RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
    cl14633
    Location:6 → 97
    DD; Death Domain Superfamily of protein-protein interaction domains
    cl17041
    Location:276 → 824
    helicase_insert_domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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