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sgca sarcoglycan, alpha [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101475360, updated on 8-Mar-2024

Summary

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Gene symbol
sgca
Gene description
sarcoglycan, alpha
See related
Ensembl:ENSMZEG00005005635
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
zebrafish all
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Genomic context

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See sgca in Genome Data Viewer
Location:
chromosome: LG8
Exon count:
11
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG8 NC_036787.1 (18571750..18575983)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531758.1 (2550117..2554350)

Linkage Group LG8 - NC_036787.1Genomic Context describing neighboring genes Neighboring gene PR domain containing 9 Neighboring gene protein phosphatase 1, regulatory subunit 9Bb Neighboring gene collagen, type I, alpha 1b Neighboring gene putative all-trans-retinol 13,14-reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-sarcoglycan; epsilon-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036787.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    18571750..18575983
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004556712.1 → XP_004556769.1  alpha-sarcoglycan isoform X1

    See identical proteins and their annotated locations for XP_004556769.1

    UniProtKB/TrEMBL
    A0A3P9BBT3, A0A3P9BBU2
    Related
    ENSMZEP00005007347.1, ENSMZET00005007657.1
    Conserved Domains (1) summary
    pfam05510
    Location:23 → 348
    Sarcoglycan_2; Sarcoglycan alpha/epsilon

  2. XM_012920627.1 → XP_012776081.1  epsilon-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A3P9BBU2
    Conserved Domains (1) summary
    pfam05510
    Location:23 → 331
    Sarcoglycan_2; Sarcoglycan alpha/epsilon
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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