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aar2 AAR2 splicing factor [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101474379, updated on 8-Mar-2024

Summary

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Gene symbol
aar2
Gene description
AAR2 splicing factor
See related
Ensembl:ENSMZEG00005026542
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See aar2 in Genome Data Viewer
Location:
chromosome: LG20
Exon count:
3
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG20 NC_036799.1 (23429155..23432570)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531723.1 (2486895..2490515, complement)

Linkage Group LG20 - NC_036799.1Genomic Context describing neighboring genes Neighboring gene L-rhamnose-binding lectin SML Neighboring gene pre-mRNA-processing factor 6 Neighboring gene uncharacterized LOC112436682 Neighboring gene elastin microfibril interfacer 3 Neighboring gene UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in spliceosomal tri-snRNP complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein AAR2 homolog
Names
AAR2 splicing factor homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036799.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    23429155..23432570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004545984.2 → XP_004546041.1  protein AAR2 homolog

    See identical proteins and their annotated locations for XP_004546041.1

    UniProtKB/TrEMBL
    A0A3P9DN18
    Related
    ENSMZEP00005035526.1, ENSMZET00005036782.1
    Conserved Domains (1) summary
    pfam05282
    Location:22 → 366
    AAR2; AAR2 protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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