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LOC101471269 ras-related protein Rab-39B [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101471269, updated on 21-Dec-2023

Summary

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Gene symbol
LOC101471269
Gene description
ras-related protein Rab-39B
See related
Ensembl:ENSMZEG00005002185
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
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Genomic context

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See LOC101471269 in Genome Data Viewer
Location:
chromosome: LG10
Exon count:
5
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG10 NC_036789.1 (18823630..18829865)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531733.1 (4888933..4895172)

Linkage Group LG10 - NC_036789.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-binding clathrin assembly protein Neighboring gene RAB38c, member of RAS oncogene family Neighboring gene solute carrier family 7 member 3a Neighboring gene sorting nexin 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rab protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ras-related protein Rab-39B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036789.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    18823630..18829865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004550308.4 → XP_004550365.1  ras-related protein Rab-39B

    See identical proteins and their annotated locations for XP_004550365.1

    UniProtKB/TrEMBL
    A0A3P9AZ86
    Related
    ENSMZEP00005002787.1, ENSMZET00005002903.1
    Conserved Domains (1) summary
    cd04111
    Location:7 → 213
    Rab39; Rab GTPase family 39 (Rab39)
Nucleotide Protein
Heading Accession and Version

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