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trpt1 tRNA phosphotransferase 1 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101469051, updated on 8-Mar-2024

Summary

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Gene symbol
trpt1
Gene description
tRNA phosphotransferase 1
See related
Ensembl:ENSMZEG00005004773
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See trpt1 in Genome Data Viewer
Location:
chromosome: LG2
Exon count:
8
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG2 NC_036781.1 (27746013..27751942, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531722.1 (4040279..4042673, complement)

Linkage Group LG2 - NC_036781.1Genomic Context describing neighboring genes Neighboring gene FERM domain containing kindlin 3b Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene zinc finger and BTB domain containing 3 Neighboring gene ribonuclease H2, subunit C Neighboring gene seipin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA 2'-phosphotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA splicing, via endonucleolytic cleavage and ligation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA 2'-phosphotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036781.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    27746013..27751942 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014412603.1 → XP_014268089.1  tRNA 2'-phosphotransferase 1

    UniProtKB/TrEMBL
    A0A3P9B8K2
    Related
    ENSMZEP00005006131.1, ENSMZET00005006419.1
    Conserved Domains (1) summary
    pfam01885
    Location:30 → 203
    PTS_2-RNA; RNA 2'-phosphotransferase, Tpt1 / KptA family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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