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trmt6 tRNA methyltransferase 6 non-catalytic subunit [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101467234, updated on 8-Mar-2024

Summary

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Gene symbol
trmt6
Gene description
tRNA methyltransferase 6 non-catalytic subunit
See related
Ensembl:ENSMZEG00005010771
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See trmt6 in Genome Data Viewer
Location:
chromosome: LG15
Exon count:
12
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG15 NC_036794.1 (3630610..3638941, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531716.1 (7845369..7853798)

Linkage Group LG15 - NC_036794.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 23 member 1 Neighboring gene chromogranin B Neighboring gene FERM domain containing kindlin 1 Neighboring gene bone morphogenetic protein 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of tRNA (m1A) methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036794.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    3630610..3638941 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004542158.4 → XP_004542215.1  tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6

    UniProtKB/TrEMBL
    A0A3P9BWR5
    Related
    ENSMZEP00005014297.1, ENSMZET00005014775.1
    Conserved Domains (1) summary
    pfam04189
    Location:16 → 257
    Gcd10p; Gcd10p family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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