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csde1 cold shock domain containing E1, RNA-binding [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101466231, updated on 8-Mar-2024

Summary

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Gene symbol
csde1
Gene description
cold shock domain containing E1, RNA-binding
See related
Ensembl:ENSMZEG00005021675
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See csde1 in Genome Data Viewer
Location:
chromosome: LG20
Exon count:
24
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG20 NC_036799.1 (10386082..10401626)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531935.1 (251909..267771)

Linkage Group LG20 - NC_036799.1Genomic Context describing neighboring genes Neighboring gene mitochondrial contact site and cristae organizing system subunit 10 Neighboring gene suppressor of IKBKE 1 Neighboring gene adenosine monophosphate deaminase 1 (isoform M) Neighboring gene DENN/MADD domain containing 2C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cold shock domain-containing protein E1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036799.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    10386082..10401626
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012925160.3 → XP_012780614.1  cold shock domain-containing protein E1 isoform X5

    UniProtKB/TrEMBL
    A0A3P9D4S3
    Related
    ENSMZEP00005029096.1, ENSMZET00005030014.1
    Conserved Domains (4) summary
    smart00357
    Location:602 → 663
    CSP; Cold shock protein domain
    pfam00313
    Location:245 → 307
    CSD; 'Cold-shock' DNA-binding domain
    pfam12901
    Location:837 → 869
    SUZ-C; SUZ-C motif
    cl09927
    Location:68 → 132
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  2. XM_012925158.3 → XP_012780612.1  cold shock domain-containing protein E1 isoform X1

    UniProtKB/TrEMBL
    A0A3P9D4U0
    Conserved Domains (3) summary
    smart00357
    Location:613 → 674
    CSP; Cold shock protein domain
    pfam00313
    Location:256 → 318
    CSD; 'Cold-shock' DNA-binding domain
    cl09927
    Location:79 → 143
    S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...

  3. XM_004572746.4 → XP_004572803.1  cold shock domain-containing protein E1 isoform X2

    See identical proteins and their annotated locations for XP_004572803.1

    UniProtKB/TrEMBL
    A0A3P9D4U0
    Conserved Domains (4) summary
    smart00357
    Location:607 → 668
    CSP; Cold shock protein domain
    pfam00313
    Location:256 → 318
    CSD; 'Cold-shock' DNA-binding domain
    cl09927
    Location:79 → 143
    S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...
    cl25438
    Location:255 → 385
    RNB; RNB domain

  4. XM_004572747.4 → XP_004572804.1  cold shock domain-containing protein E1 isoform X3

    UniProtKB/TrEMBL
    A0A3P9D4U0
    Conserved Domains (4) summary
    smart00357
    Location:603 → 664
    CSP; Cold shock protein domain
    pfam00313
    Location:256 → 318
    CSD; 'Cold-shock' DNA-binding domain
    pfam12901
    Location:838 → 870
    SUZ-C; SUZ-C motif
    cl09927
    Location:79 → 143
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...

  5. XM_012925159.3 → XP_012780613.1  cold shock domain-containing protein E1 isoform X4

    UniProtKB/TrEMBL
    A0A3P9D4U0
    Conserved Domains (3) summary
    smart00357
    Location:603 → 664
    CSP; Cold shock protein domain
    pfam00313
    Location:256 → 318
    CSD; 'Cold-shock' DNA-binding domain
    cl09927
    Location:79 → 143
    S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...

  6. XM_004572750.4 → XP_004572807.1  cold shock domain-containing protein E1 isoform X7

    See identical proteins and their annotated locations for XP_004572807.1

    UniProtKB/TrEMBL
    A0A3P9D4U0
    Conserved Domains (4) summary
    smart00357
    Location:593 → 654
    CSP; Cold shock protein domain
    pfam00313
    Location:256 → 318
    CSD; 'Cold-shock' DNA-binding domain
    cl09927
    Location:79 → 143
    S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...
    cl25438
    Location:255 → 385
    RNB; RNB domain

  7. XM_012925161.3 → XP_012780615.1  cold shock domain-containing protein E1 isoform X6

    See identical proteins and their annotated locations for XP_012780615.1

    UniProtKB/TrEMBL
    A0A3P9D4U0
    Related
    ENSMZEP00005029111.1, ENSMZET00005030028.1
    Conserved Domains (3) summary
    smart00357
    Location:594 → 655
    CSP; Cold shock protein domain
    pfam00313
    Location:237 → 299
    CSD; 'Cold-shock' DNA-binding domain
    cl09927
    Location:79 → 143
    S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...

  8. XM_004572752.4 → XP_004572809.1  cold shock domain-containing protein E1 isoform X8

    See identical proteins and their annotated locations for XP_004572809.1

    UniProtKB/TrEMBL
    A0A3P9D4I5, A0A3P9D4U0
    Related
    ENSMZEP00005029117.1, ENSMZET00005030035.1
    Conserved Domains (4) summary
    smart00357
    Location:574 → 635
    CSP; Cold shock protein domain
    pfam00313
    Location:237 → 299
    CSD; 'Cold-shock' DNA-binding domain
    cl09927
    Location:79 → 143
    S1_like; S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. ...
    cl25438
    Location:236 → 366
    RNB; RNB domain

  9. XM_012925162.3 → XP_012780616.1  cold shock domain-containing protein E1 isoform X9

    UniProtKB/TrEMBL
    A0A3P9D4S3
    Conserved Domains (4) summary
    smart00357
    Location:560 → 621
    CSP; Cold shock protein domain
    pfam00313
    Location:203 → 265
    CSD; 'Cold-shock' DNA-binding domain
    pfam12901
    Location:795 → 827
    SUZ-C; SUZ-C motif
    cl09927
    Location:26 → 90
    S1_like; Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains ...
Nucleotide Protein
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