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capn3a calpain 3a, (p94) [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101466182, updated on 8-Mar-2024

Summary

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Gene symbol
capn3a
Gene description
calpain 3a, (p94)
See related
Ensembl:ENSMZEG00005011815
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Also known as
capn3
Orthologs
human zebrafish all
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Genomic context

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See capn3a in Genome Data Viewer
Location:
chromosome: LG19
Exon count:
21
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG19 NC_036798.1 (14766540..14780459)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531714.1 (1778853..1792766)

Linkage Group LG19 - NC_036798.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 87A Neighboring gene glucosidase, alpha; neutral C Neighboring gene zinc finger protein 106a Neighboring gene proton activated chloride channel 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3
Names
calpain 3, (p94)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036798.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    14766540..14780459
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004540012.4 → XP_004540069.1  calpain-3 isoform X1

    UniProtKB/TrEMBL
    A0A3P9C1J5
    Conserved Domains (4) summary
    pfam00648
    Location:51 → 351
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:372 → 515
    Calpain_III; Calpain large subunit, domain III
    cd15897
    Location:545 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:545 → 715
    EFh_PEF; The penta-EF hand (PEF) family

  2. XM_004540013.4 → XP_004540070.1  calpain-3 isoform X2

    UniProtKB/TrEMBL
    A0A3P9C0N9, A0A3P9C1J5
    Related
    ENSMZEP00005015739.1, ENSMZET00005016247.1
    Conserved Domains (4) summary
    cd15897
    Location:545 → 573
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:545 → 712
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:51 → 351
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:372 → 510
    Calpain_III; Calpain large subunit, domain III
Nucleotide Protein
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