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aicda activation-induced cytidine deaminase [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101463826, updated on 19-Jun-2024

Summary

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Gene symbol
aicda
Gene description
activation-induced cytidine deaminase
See related
Ensembl:ENSMZEG00005016678
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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See aicda in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
5
Annotation release Status Assembly LG Location
104 current M_zebra_UMD2a (GCF_000238955.4) LG11 NC_036790.1 (18551507..18553142, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531735.1 (364036..365671, complement)

Linkage Group LG11 - NC_036790.1Genomic Context describing neighboring genes Neighboring gene microfibril associated protein 5 Neighboring gene adaptin ear-binding coat-associated protein 1 Neighboring gene N-acetyltransferase 14 (GCN5-related, putative) Neighboring gene zinc finger protein 628

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
single-stranded DNA cytosine deaminase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NC_036790.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    18551507..18553142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004550735.1 → XP_004550792.1  single-stranded DNA cytosine deaminase

    See identical proteins and their annotated locations for XP_004550792.1

    UniProtKB/TrEMBL
    A0A3P9CJ00, A0A3P9CJD6
    Related
    ENSMZEP00005022262.1, ENSMZET00005023005.1
    Conserved Domains (1) summary
    pfam18778
    Location:9 → 193
    NAD1; Novel AID APOBEC clade 1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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