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Pgant5 polypeptide N-acetylgalactosaminyltransferase 5 [ Ceratitis capitata (Mediterranean fruit fly) ]

Gene ID: 101454675, updated on 24-May-2024

Summary

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Gene symbol
Pgant5
Gene description
polypeptide N-acetylgalactosaminyltransferase 5
See related
EnsemblRapid:LOC101454675
Gene type
protein coding
RefSeq status
MODEL
Organism
Ceratitis capitata
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Ceratitis; Ceratitis
Also known as
GALT5
Orthologs
fruit fly all
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Genomic context

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See Pgant5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
103 current Ccap_2.1 (GCF_000347755.3) Unplaced Scaffold NW_019376261.1 (3129625..3221695)

NW_019376261.1Genomic Context describing neighboring genes Neighboring gene mucin-5AC Neighboring gene 2-acylglycerol O-acyltransferase 2 Neighboring gene WD repeat domain phosphoinositide-interacting protein 2 Neighboring gene ribosomal protein L37A Neighboring gene U4 spliceosomal RNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019376261 Unplaced Scaffold Reference Ccap_2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genomic perspective to assessing quality of mass-reared SIT flies used in Mediterranean fruit fly (Ceratitis capitata) eradication in California. Calla B, et al. BMC Genomics, 2014 Feb 5. PMID 24495485, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ceratitis capitata Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ccap_2.1 Primary Assembly

Genomic

  1. NW_019376261.1 Reference Ccap_2.1 Primary Assembly

    Range
    3129625..3221695
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012301424.3 → XP_012156814.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X1

    See identical proteins and their annotated locations for XP_012156814.1

    Related
    XP_012156814.1, XM_012301424.3
    Conserved Domains (2) summary
    cd02510
    Location:194 → 495
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:508 → 624
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_012301425.3 → XP_012156815.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X1

    See identical proteins and their annotated locations for XP_012156815.1

    Related
    XP_012156815.1, XM_012301425.3
    Conserved Domains (2) summary
    cd02510
    Location:194 → 495
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:508 → 624
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  3. XM_004524580.4 → XP_004524637.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X1

    See identical proteins and their annotated locations for XP_004524637.1

    Related
    XP_004524637.1, XM_004524580.4
    Conserved Domains (2) summary
    cd02510
    Location:194 → 495
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:508 → 624
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  4. XM_020858594.1 → XP_020714253.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X1

    Related
    XP_020714253.1, XM_020858594.1
    Conserved Domains (2) summary
    cd02510
    Location:194 → 495
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:508 → 624
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  5. XM_020858596.2 → XP_020714255.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X2

    Related
    XP_020714255.1, XM_020858596.2
    Conserved Domains (2) summary
    cd02510
    Location:194 → 495
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:508 → 624
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  6. XM_020858598.2 → XP_020714257.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X4

    Related
    XP_020714257.1, XM_020858598.2
    Conserved Domains (2) summary
    cd02510
    Location:194 → 494
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:507 → 623
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  7. XM_020858593.2 → XP_020714252.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X1

    Related
    XP_020714252.1, XM_020858593.2
    Conserved Domains (2) summary
    cd02510
    Location:194 → 495
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:508 → 624
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  8. XM_020858597.2 → XP_020714256.1  polypeptide N-acetylgalactosaminyltransferase 5 isoform X3

    UniProtKB/TrEMBL
    W8BGX1
    Related
    XP_020714256.1, XM_020858597.2
    Conserved Domains (2) summary
    cd02510
    Location:194 → 494
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:507 → 623
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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