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LOC101448202 uncharacterized LOC101448202 [ Homo sapiens (human) ]

Gene ID: 101448202, updated on 10-Oct-2023

Summary

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Gene symbol
LOC101448202
Gene description
uncharacterized LOC101448202
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in endometrium (RPKM 5.3), placenta (RPKM 5.0) and 18 other tissues See more
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Genomic context

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See LOC101448202 in Genome Data Viewer
Location:
9q34.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (134819415..134872618, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (147040392..147094307, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (137711261..137764464, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902300 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137546641-137547505 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137547506-137548369 Neighboring gene COL5A1 antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137549426-137550233 Neighboring gene collagen type V alpha 1 chain Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137571911-137572432 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137572433-137572952 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137572953-137573473 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137573474-137573993 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137580636-137581426 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137589714-137590538 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137590539-137591361 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137600147-137600714 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137615715-137616537 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137643183-137643695 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:137642670-137643182 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:137644538-137644744 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29286 Neighboring gene uncharacterized LOC124902301 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:137665167-137665668 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:137669421-137669566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137670079-137670688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137676102-137677054 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137696519-137697019 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137733985-137734819 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137737131-137737631 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29288 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29289 Neighboring gene microRNA 3689d-1 Neighboring gene microRNA 3689d-2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137755823-137756551 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137756552-137757279 Neighboring gene microRNA 3689c Neighboring gene microRNA 3689a Neighboring gene microRNA 3689b Neighboring gene microRNA 3689f Neighboring gene microRNA 3689e Neighboring gene ReSE screen-validated silencer GRCh37_chr9:137764334-137764507 Neighboring gene MPRA-validated peak7344 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137781651-137782151 Neighboring gene ficolin 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29290 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137820358-137821216 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:137821217-137822074 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29291 Neighboring gene uncharacterized LOC105376314 Neighboring gene uncharacterized LOC124902302 Neighboring gene ficolin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103451.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL603650

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    134819415..134872618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    147040392..147094307 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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