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NFYB nuclear transcription factor Y subunit beta [ Dasypus novemcinctus (nine-banded armadillo) ]

Gene ID: 101435044, updated on 8-Mar-2024

Summary

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Gene symbol
NFYB
Gene description
nuclear transcription factor Y subunit beta
See related
Ensembl:ENSDNOG00000009984
Gene type
protein coding
RefSeq status
MODEL
Organism
Dasypus novemcinctus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Cingulata; Dasypodidae; Dasypus
Orthologs
human mouse all
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Genomic context

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See NFYB in Genome Data Viewer
Location:
chromosome: 12
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_07 current mDasNov1.hap2 (GCF_030445035.1) 12 NC_080684.1 (88539574..88580588, complement)
102 previous assembly Dasnov3.0 (GCF_000208655.1) Unplaced Scaffold NW_004458642.1 (1229361..1271594)

Chromosome 12 - NC_080684.1Genomic Context describing neighboring genes Neighboring gene peptide chain release factor 1-like, mitochondrial Neighboring gene glycosyltransferase 8 domain containing 2 Neighboring gene host cell factor C2 Neighboring gene uncharacterized LOC101446259 Neighboring gene thioredoxin reductase 1 Neighboring gene small nucleolar RNA U13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit beta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030445035.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mDasNov1.hap2

Genomic

  1. NC_080684.1 Reference mDasNov1.hap2

    Range
    88539574..88580588 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012521046.3 → XP_012376500.1  nuclear transcription factor Y subunit beta isoform X2

    See identical proteins and their annotated locations for XP_012376500.1

    Conserved Domains (1) summary
    pfam00808
    Location:57 → 122
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

  2. XM_058308652.1 → XP_058164635.1  nuclear transcription factor Y subunit beta isoform X2

  3. XM_058308653.1 → XP_058164636.1  nuclear transcription factor Y subunit beta isoform X3

  4. XM_058308651.1 → XP_058164634.1  nuclear transcription factor Y subunit beta isoform X2

  5. XM_004446794.4 → XP_004446851.1  nuclear transcription factor Y subunit beta isoform X2

    See identical proteins and their annotated locations for XP_004446851.1

    Conserved Domains (1) summary
    pfam00808
    Location:57 → 122
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

  6. XM_058308650.1 → XP_058164633.1  nuclear transcription factor Y subunit beta isoform X1

Nucleotide Protein
Heading Accession and Version

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