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LOC101425279 pulmonary surfactant-associated protein A [ Dasypus novemcinctus (nine-banded armadillo) ]

Gene ID: 101425279, updated on 26-Oct-2023

Summary

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Gene symbol
LOC101425279
Gene description
pulmonary surfactant-associated protein A
Gene type
protein coding
RefSeq status
MODEL
Organism
Dasypus novemcinctus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Xenarthra; Cingulata; Dasypodidae; Dasypus
Also known as
SFTPA2
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Genomic context

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See LOC101425279 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_07 current mDasNov1.hap2 (GCF_030445035.1) 6 NC_080678.1 (124373349..124377103, complement)
102 previous assembly Dasnov3.0 (GCF_000208655.1) Unplaced Scaffold NW_004482513.1 (2138390..2142145, complement)

Chromosome 6 - NC_080678.1Genomic Context describing neighboring genes Neighboring gene NEDD8-conjugating enzyme UBE2F-like Neighboring gene surfactant protein D Neighboring gene mannose-binding protein A-like Neighboring gene methionine adenosyltransferase 1A Neighboring gene DPY30 domain containing 1 Neighboring gene DPY30 domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein A
Names
surfactant protein A2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030445035.1-RS_2023_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mDasNov1.hap2

Genomic

  1. NC_080678.1 Reference mDasNov1.hap2

    Range
    124373349..124377103 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004467370.4 → XP_004467427.1  pulmonary surfactant-associated protein A

    See identical proteins and their annotated locations for XP_004467427.1

    Conserved Domains (2) summary
    cd03591
    Location:135 → 247
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:73 → 101
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_004467367.4 → XP_004467424.1  pulmonary surfactant-associated protein A

    See identical proteins and their annotated locations for XP_004467424.1

    Conserved Domains (2) summary
    cd03591
    Location:135 → 247
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:73 → 101
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_004467368.4 → XP_004467425.1  pulmonary surfactant-associated protein A

    See identical proteins and their annotated locations for XP_004467425.1

    Conserved Domains (2) summary
    cd03591
    Location:135 → 247
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:73 → 101
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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