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LOC101404376 WASH complex subunit FAM21A [ Ceratotherium simum simum (southern white rhinoceros) ]

Gene ID: 101404376, updated on 2-Nov-2023

Summary

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Gene symbol
LOC101404376
Gene description
WASH complex subunit FAM21A
Gene type
protein coding
RefSeq status
MODEL
Organism
Ceratotherium simum simum (sub-species: simum)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Ceratotherium
Also known as
FAM21A; FAM21C
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Genomic context

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See LOC101404376 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
101 current CerSimSim1.0 (GCF_000283155.1) Unplaced Scaffold NW_004454197.1 (11707028..11760794, complement)

NW_004454197.1Genomic Context describing neighboring genes Neighboring gene membrane associated ring-CH-type finger 8 Neighboring gene zinc finger AN1-type containing 4 Neighboring gene uncharacterized LOC106802178 Neighboring gene microseminoprotein beta Neighboring gene nuclear receptor coactivator 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004454197.1 Unplaced Scaffold Reference CerSimSim1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables retromer complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization to endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of WASH complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in early endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WASH complex subunit FAM21A
Names
family with sequence similarity 21, member A
family with sequence similarity 21, member C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ceratotherium simum simum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CerSimSim1.0 Primary Assembly

Genomic

  1. NW_004454197.1 Reference CerSimSim1.0 Primary Assembly

    Range
    11707028..11760794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004432434.2 → XP_004432491.1  WASH complex subunit FAM21A isoform X2

    Conserved Domains (1) summary
    pfam15255
    Location:927 → 1052
    CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region

  2. XM_004432433.2 → XP_004432490.1  WASH complex subunit FAM21A isoform X1

    Conserved Domains (1) summary
    pfam15255
    Location:946 → 1073
    CAP-ZIP_m; WASH complex subunit CAP-Z interacting, central region
Nucleotide Protein
Heading Accession and Version

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