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NYX nyctalopin [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101386967, updated on 8-Mar-2024

Summary

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Gene symbol
NYX
Gene description
nyctalopin
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450363.1 (3287992..3307303)

NW_004450363.1Genomic Context describing neighboring genes Neighboring gene GTP-binding nuclear protein Ran-like Neighboring gene DEAD-box helicase 3 X-linked Neighboring gene calcium/calmodulin dependent serine protein kinase Neighboring gene G protein-coupled receptor 34 Neighboring gene G protein-coupled receptor 82

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450363.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nyctalopin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450363.1 Reference Oros_1.0 Primary Assembly

    Range
    3287992..3307303
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004399737.1 → XP_004399794.1  nyctalopin

    UniProtKB/TrEMBL
    A0A2U3VWM8
    Conserved Domains (5) summary
    smart00082
    Location:336 → 370
    LRRCT; Leucine rich repeat C-terminal domain
    cd00116
    Location:73 → 299
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00031
    Location:328 → 340
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:88 → 111
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:86 → 147
    LRR_8; Leucine rich repeat
Nucleotide Protein
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