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NCAM1 neural cell adhesion molecule 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101386765, updated on 8-Mar-2024

Summary

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Gene symbol
NCAM1
Gene description
neural cell adhesion molecule 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See NCAM1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004451470.1 (231804..532885)

NW_004451470.1Genomic Context describing neighboring genes Neighboring gene heat shock cognate 71 kDa protein pseudogene Neighboring gene tetratricopeptide repeat domain 12 Neighboring gene ankyrin repeat and kinase domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004451470.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004451470.1 Reference Oros_1.0 Primary Assembly

    Range
    231804..532885
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012568087.1 → XP_012423541.1  neural cell adhesion molecule 1 isoform X4

    Conserved Domains (9) summary
    pfam05887
    Location:764 → 847
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 411
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:427 → 495
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:420 → 498
    IG_like; Immunoglobulin like
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:611 → 692
    fn3; Fibronectin type III domain

  2. XM_004416363.2 → XP_004416420.1  neural cell adhesion molecule 1 isoform X2

    UniProtKB/TrEMBL
    A0A2U3X2Q0
    Conserved Domains (9) summary
    pfam05887
    Location:765 → 848
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 411
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:427 → 495
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:420 → 498
    IG_like; Immunoglobulin like
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:612 → 693
    fn3; Fibronectin type III domain

  3. XM_004416364.2 → XP_004416421.1  neural cell adhesion molecule 1 isoform X3

    UniProtKB/TrEMBL
    A0A2U3X309
    Conserved Domains (9) summary
    pfam05887
    Location:765 → 848
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 411
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:427 → 495
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:420 → 498
    IG_like; Immunoglobulin like
    cd00063
    Location:507 → 604
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:611 → 693
    fn3; Fibronectin type III domain

  4. XM_012568086.1 → XP_012423540.1  neural cell adhesion molecule 1 isoform X1

    Conserved Domains (9) summary
    pfam05887
    Location:776 → 859
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:417 → 485
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:410 → 488
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:623 → 704
    fn3; Fibronectin type III domain

  5. XM_004416365.2 → XP_004416422.1  neural cell adhesion molecule 1 isoform X5

    UniProtKB/TrEMBL
    A0A2U3X2T3
    Conserved Domains (9) summary
    pfam05887
    Location:755 → 838
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:417 → 485
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:410 → 488
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:602 → 683
    fn3; Fibronectin type III domain

  6. XM_004416366.2 → XP_004416423.1  neural cell adhesion molecule 1 isoform X6

    UniProtKB/TrEMBL
    A0A2U3X2Q9
    Conserved Domains (9) summary
    pfam05887
    Location:755 → 838
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:417 → 485
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:410 → 488
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:601 → 683
    fn3; Fibronectin type III domain

  7. XM_012568088.1 → XP_012423542.1  neural cell adhesion molecule 1 isoform X7

    Conserved Domains (9) summary
    pfam05887
    Location:754 → 837
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:417 → 485
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:410 → 488
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:601 → 682
    fn3; Fibronectin type III domain

  8. XM_012568089.1 → XP_012423543.1  neural cell adhesion molecule 1 isoform X8

    Conserved Domains (8) summary
    cd05730
    Location:211 → 306
    Ig3_NCAM-1_like; Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    cd05865
    Location:20 → 115
    Ig1_NCAM-1; First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1
    cd05869
    Location:305 → 401
    Ig5_NCAM-1; Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)
    smart00408
    Location:417 → 485
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:410 → 488
    IG_like; Immunoglobulin like
    cd00063
    Location:497 → 594
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:218 → 303
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:601 → 683
    fn3; Fibronectin type III domain
Nucleotide Protein
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