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GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101385977, updated on 8-Mar-2024

Summary

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Gene symbol
GDPD1
Gene description
glycerophosphodiester phosphodiesterase domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See GDPD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450336.1 (972673..1019742)

NW_004450336.1Genomic Context describing neighboring genes Neighboring gene proline rich 11 Neighboring gene SMG8 nonsense mediated mRNA decay factor Neighboring gene yippee like 2 Neighboring gene 6.8 kDa mitochondrial proteolipid pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450336.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acylethanolamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycerophosphodiester phosphodiesterase domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450336.1 Reference Oros_1.0 Primary Assembly

    Range
    972673..1019742
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004397654.1 → XP_004397711.1  glycerophosphodiester phosphodiesterase domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2U3VR51
    Conserved Domains (1) summary
    cd08612
    Location:14 → 311
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  2. XM_004397656.1 → XP_004397713.1  glycerophosphodiester phosphodiesterase domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2U3VRF7
    Conserved Domains (1) summary
    cd08612
    Location:14 → 275
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  3. XM_004397655.1 → XP_004397712.1  glycerophosphodiester phosphodiesterase domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A2U3VR68
    Conserved Domains (2) summary
    cd08612
    Location:14 → 282
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins
    pfam03009
    Location:45 → 282
    GDPD; Glycerophosphoryl diester phosphodiesterase family
Nucleotide Protein
Heading Accession and Version

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