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ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101383996, updated on 8-Mar-2024

Summary

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Gene symbol
ST3GAL6
Gene description
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See ST3GAL6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450265.1 (12234377..12293325, complement)

NW_004450265.1Genomic Context describing neighboring genes Neighboring gene protein yippee-like 5 pseudogene Neighboring gene discoidin, CUB and LCCL domain containing 2 Neighboring gene uncharacterized LOC101376661 Neighboring gene coproporphyrinogen oxidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450265.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type 2 lactosamine alpha-2,3-sialyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450265.1 Reference Oros_1.0 Primary Assembly

    Range
    12234377..12293325 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004391670.2 → XP_004391727.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    See identical proteins and their annotated locations for XP_004391727.1

    UniProtKB/TrEMBL
    A0A2U3VB68
    Conserved Domains (1) summary
    pfam00777
    Location:1 → 184
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_004391671.2 → XP_004391728.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    See identical proteins and their annotated locations for XP_004391728.1

    UniProtKB/TrEMBL
    A0A2U3VB68
    Conserved Domains (1) summary
    pfam00777
    Location:1 → 184
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_004391669.2 → XP_004391726.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    See identical proteins and their annotated locations for XP_004391726.1

    UniProtKB/TrEMBL
    A0A2U3VB68
    Conserved Domains (1) summary
    pfam00777
    Location:1 → 184
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_012566893.1 → XP_012422347.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    Conserved Domains (1) summary
    pfam00777
    Location:122 → 367
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  5. XM_004391668.2 → XP_004391725.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    See identical proteins and their annotated locations for XP_004391725.1

    UniProtKB/TrEMBL
    A0A2U3VBN2
    Conserved Domains (1) summary
    pfam00777
    Location:83 → 328
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  6. XM_004391667.2 → XP_004391724.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    See identical proteins and their annotated locations for XP_004391724.1

    UniProtKB/TrEMBL
    A0A2U3VBN2
    Conserved Domains (1) summary
    pfam00777
    Location:83 → 328
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
Heading Accession and Version

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