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CNTN6 contactin 6 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101383439, updated on 8-Mar-2024

Summary

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Gene symbol
CNTN6
Gene description
contactin 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See CNTN6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450970.1 (358164..640430, complement)

NW_004450970.1Genomic Context describing neighboring genes Neighboring gene rRNA-processing protein FCF1 homolog pseudogene Neighboring gene ferritin heavy chain pseudogene Neighboring gene 40S ribosomal protein SA-like Neighboring gene histone-lysine N-methyltransferase NSD3-like Neighboring gene uncharacterized LOC105758165 Neighboring gene atlastin-1 pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450970.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450970.1 Reference Oros_1.0 Primary Assembly

    Range
    358164..640430 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012566930.1 → XP_012422384.1  contactin-6 isoform X2

    UniProtKB/TrEMBL
    A0A2U3WUV5
    Conserved Domains (4) summary
    smart00410
    Location:434 → 522
    IG_like; Immunoglobulin like
    cd00063
    Location:526 → 619
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:336 → 424
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:247 → 331
    Ig; Immunoglobulin domain

  2. XM_012566929.1 → XP_012422383.1  contactin-6 isoform X1

    See identical proteins and their annotated locations for XP_012422383.1

    UniProtKB/TrEMBL
    A0A2U3WUV5
    Conserved Domains (4) summary
    smart00410
    Location:506 → 594
    IG_like; Immunoglobulin like
    cd00063
    Location:598 → 691
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:408 → 496
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:319 → 403
    Ig; Immunoglobulin domain

  3. XM_004413174.2 → XP_004413231.2  contactin-6 isoform X1

    See identical proteins and their annotated locations for XP_004413231.2

    UniProtKB/TrEMBL
    A0A2U3WUV5
    Conserved Domains (4) summary
    smart00410
    Location:506 → 594
    IG_like; Immunoglobulin like
    cd00063
    Location:598 → 691
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:408 → 496
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:319 → 403
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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