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CHST11 carbohydrate sulfotransferase 11 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101381523, updated on 8-Mar-2024

Summary

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Gene symbol
CHST11
Gene description
carbohydrate sulfotransferase 11
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See CHST11 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004451092.1 (474749..724088, complement)

NW_004451092.1Genomic Context describing neighboring genes Neighboring gene eukaryotic initiation factor 4A-I-like Neighboring gene solute carrier family 41 member 2 Neighboring gene transmembrane emp24 domain-containing protein 2 pseudogene Neighboring gene thioredoxin reductase 1 Neighboring gene EP300 interacting inhibitor of differentiation 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004451092.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004451092.1 Reference Oros_1.0 Primary Assembly

    Range
    474749..724088 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004414251.2 → XP_004414308.1  carbohydrate sulfotransferase 11 isoform X1

    UniProtKB/TrEMBL
    A0A2U3WXU9
    Conserved Domains (1) summary
    pfam03567
    Location:113 → 343
    Sulfotransfer_2; Sulfotransferase family

  2. XM_004414252.2 → XP_004414309.1  carbohydrate sulfotransferase 11 isoform X2

    UniProtKB/TrEMBL
    A0A2U3WXK7
    Conserved Domains (1) summary
    pfam03567
    Location:108 → 338
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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