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CANX calnexin [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101379380, updated on 8-Mar-2024

Summary

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Gene symbol
CANX
Gene description
calnexin
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See CANX in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450919.1 (855721..888851, complement)

NW_004450919.1Genomic Context describing neighboring genes Neighboring gene leukotriene C4 synthase Neighboring gene mastermind like transcriptional coactivator 1 Neighboring gene chibby family member 3 Neighboring gene heterogeneous nuclear ribonucleoprotein H1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450919.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calnexin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450919.1 Reference Oros_1.0 Primary Assembly

    Range
    855721..888851 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004412673.2 → XP_004412730.1  calnexin isoform X1

    See identical proteins and their annotated locations for XP_004412730.1

    UniProtKB/TrEMBL
    A0A2U3WTV8
    Conserved Domains (1) summary
    pfam00262
    Location:72 → 441
    Calreticulin; Calreticulin family

  2. XM_004412674.2 → XP_004412731.1  calnexin isoform X1

    See identical proteins and their annotated locations for XP_004412731.1

    UniProtKB/TrEMBL
    A0A2U3WTV8
    Conserved Domains (1) summary
    pfam00262
    Location:72 → 441
    Calreticulin; Calreticulin family

  3. XM_004412675.2 → XP_004412732.1  calnexin isoform X2

    UniProtKB/TrEMBL
    A0A2U3WTM1
    Conserved Domains (1) summary
    pfam00262
    Location:48 → 386
    Calreticulin; Calreticulin family
Nucleotide Protein
Heading Accession and Version

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