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SDC2 syndecan 2 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101378703, updated on 8-Mar-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004451106.1 (539678..638032)

NW_004451106.1Genomic Context describing neighboring genes Neighboring gene mitochondrial transcription termination factor 3 Neighboring gene phosphatidylserine synthase 1 Neighboring gene P antigen family member 3 pseudogene Neighboring gene carboxypeptidase Q

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004451106.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004451106.1 Reference Oros_1.0 Primary Assembly

    Range
    539678..638032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004414309.2 → XP_004414366.1  syndecan-2

    UniProtKB/TrEMBL
    A0A2U3WXZ7
    Conserved Domains (1) summary
    pfam01034
    Location:138 → 199
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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