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PGAP1 post-GPI attachment to proteins inositol deacylase 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101377355, updated on 8-Mar-2024

Summary

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Gene symbol
PGAP1
Gene description
post-GPI attachment to proteins inositol deacylase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See PGAP1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450280.1 (5642703..5711375)

NW_004450280.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 44 Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene chromosome unknown C2orf66 homolog Neighboring gene general transcription factor IIIC subunit 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450280.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol deacylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPI inositol-deacylase
Names
post-GPI attachment to proteins 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450280.1 Reference Oros_1.0 Primary Assembly

    Range
    5642703..5711375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004393504.1 → XP_004393561.1  GPI inositol-deacylase

    UniProtKB/TrEMBL
    A0A2U3VFP9
    Conserved Domains (1) summary
    pfam07819
    Location:83 → 302
    PGAP1; PGAP1-like protein
Nucleotide Protein
Heading Accession and Version

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