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FMOD fibromodulin [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101376269, updated on 8-Mar-2024

Summary

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Gene symbol
FMOD
Gene description
fibromodulin
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Orthologs
human mouse all
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Genomic context

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See FMOD in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450274.1 (6069629..6078620, complement)

NW_004450274.1Genomic Context describing neighboring genes Neighboring gene chitinase 1 Neighboring gene BTG anti-proliferation factor 2 Neighboring gene proline and arginine rich end leucine rich repeat protein Neighboring gene opticin

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004450274.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
fibromodulin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004450274.1 Reference Oros_1.0 Primary Assembly

    Range
    6069629..6078620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004392792.2 → XP_004392849.1  fibromodulin

    UniProtKB/TrEMBL
    A0A2U3VDZ4
    Conserved Domains (4) summary
    smart00013
    Location:75 → 109
    LRRNT; Leucine rich repeat N-terminal domain
    cd00116
    Location:136 → 359
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:107 → 130
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:176 → 235
    LRR_8; Leucine rich repeat
Nucleotide Protein
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