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KIRREL1 kirre like nephrin family adhesion molecule 1 [ Odobenus rosmarus divergens (Pacific walrus) ]

Gene ID: 101375912, updated on 8-Mar-2024

Summary

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Gene symbol
KIRREL1
Gene description
kirre like nephrin family adhesion molecule 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Odobenus rosmarus divergens (sub-species: divergens)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
Also known as
KIRREL
Orthologs
human mouse all
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Genomic context

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See KIRREL1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004451280.1 (48049..133954)

NW_004451280.1Genomic Context describing neighboring genes Neighboring gene CD1d molecule Neighboring gene deoxycytidylate deaminase pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004451280.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1
Names
kin of IRRE like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Oros_1.0 Primary Assembly

Genomic

  1. NW_004451280.1 Reference Oros_1.0 Primary Assembly

    Range
    48049..133954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004415521.2 → XP_004415578.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2U3X0N2
    Conserved Domains (6) summary
    cd05759
    Location:138 → 219
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:391 → 488
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:314 → 389
    IG_like; Immunoglobulin like
    pfam07679
    Location:22 → 116
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:311 → 389
    Ig_2; Immunoglobulin domain
    cl11960
    Location:25 → 116
    Ig; Immunoglobulin domain

  2. XM_012567798.1 → XP_012423252.1  kin of IRRE-like protein 1 isoform X2

    Conserved Domains (5) summary
    cd05759
    Location:38 → 119
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    cd05898
    Location:291 → 388
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:214 → 289
    IG_like; Immunoglobulin like
    pfam07679
    Location:123 → 204
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:211 → 289
    Ig_2; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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